The goals were scored by Serge Djiehoua and Bernard Parker.
The home side dominated possession and thoroughly deserved the three points for the win.
The first goal was scored by former Kaizer Chiefs forward Serge Djiehoua with a low right-footed shot from a cross by Clement Mazibuko on the right.
The second goal was scored by stunning long-range Bernard Parker shot into the top corner in the 83rd minute.
The win gives Thanda their first win in five games but they remain bottom of the table on 3 points.